PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000525933
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 281aa    MW: 31190.9 Da    PI: 9.1009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000525933genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-182878155
            AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  MDP0000525933 28 CKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAAYLLRG 78
                   799*******.7*********33....36**********************99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.38E-322885No hitNo description
PfamPF008472.8E-132878IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-282986IPR001471AP2/ERF domain
SMARTSM003801.1E-362992IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-202987IPR016177DNA-binding domain
PROSITE profilePS5103220.4552986IPR001471AP2/ERF domain
PRINTSPR003674.8E-83041IPR001471AP2/ERF domain
PRINTSPR003674.8E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEHQAPKQQK GVFANKQGKS KERTKSKCKF VGVRQRPSGK WVAEIKDTTK KIRMWLGTFE  60
TAEEAARAYD EAAYLLRGSN TRTNFSTHVP SNSPLSLKIR NLLNQKKGLK QSPXSSNPNX  120
LNXTPIATTA XITNKYTTFS DGSXNSIATF SEIFLPNCKS QKNVQVFDDA YRPDVSNCIG  180
VLQPGLFHNH FGRQWPLLTG FDQLPVTHEG NDLAKDIGMT SSPNVAAEPE VTEFERLKVE  240
RQISASIYAM NGVNEYLDNG YDSGDALWDL PSLSQLFCLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-163089363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351488.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLM5WFH41e-121M5WFH4_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s21090.12e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-54related to AP2 11